Batch up SQL operations in the ./bin/repository parents script.

Summary: Fixes T5255. Currently the ./bin/repository parents workflow is quite slow. Batching up the SQL operations should make the workflow seem much faster.

Test Plan: Not yet tested.

Reviewers: Blessed Reviewers, epriestley

Reviewed By: Blessed Reviewers, epriestley

Subscribers: epriestley, Korvin

Maniphest Tasks: T5255

Differential Revision: https://secure.phabricator.com/D9361