Since updating to HEAD today, inline comments don't appear in the timeline anymore. It reproduces on this install as well (see D10789#96741 for example)
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We are at 0c37f8db4b82 right now, which includes that commit as well.
After some more looking around and testing, it seems that inline comments are only shown in the timeline for the latest diff of a revision.
Edit: correct that - it only shows inlines for the active diff of a revision.