diff --git a/src/applications/repository/query/PhabricatorRepositoryQuery.php b/src/applications/repository/query/PhabricatorRepositoryQuery.php
--- a/src/applications/repository/query/PhabricatorRepositoryQuery.php
+++ b/src/applications/repository/query/PhabricatorRepositoryQuery.php
@@ -10,7 +10,6 @@
   private $uuids;
   private $nameContains;
   private $remoteURIs;
-  private $anyProjectPHIDs;
   private $datasourceQuery;
 
   private $numericIdentifiers;
@@ -99,11 +98,6 @@
     return $this;
   }
 
-  public function withAnyProjects(array $projects) {
-    $this->anyProjectPHIDs = $projects;
-    return $this;
-  }
-
   public function withDatasourceQuery($query) {
     $this->datasourceQuery = $query;
     return $this;
@@ -163,10 +157,13 @@
 
     $data = queryfx_all(
       $conn_r,
-      'SELECT * FROM %T r %Q %Q %Q %Q',
+      '%Q FROM %T r %Q %Q %Q %Q %Q %Q',
+      $this->buildSelectClause($conn_r),
       $table->getTableName(),
-      $this->buildJoinsClause($conn_r),
+      $this->buildJoinClause($conn_r),
       $this->buildWhereClause($conn_r),
+      $this->buildGroupClause($conn_r),
+      $this->buildHavingClause($conn_r),
       $this->buildOrderClause($conn_r),
       $this->buildLimitClause($conn_r));
 
@@ -390,32 +387,46 @@
     return $map;
   }
 
-  private function buildJoinsClause(AphrontDatabaseConnection $conn_r) {
-    $joins = array();
-
-    $join_summary_table = $this->needCommitCounts ||
-                          $this->needMostRecentCommits;
-
-    $vector = $this->getOrderVector();
-    if ($vector->containsKey('committed') ||
-        $vector->containsKey('size')) {
-      $join_summary_table = true;
+  protected function buildSelectClause(AphrontDatabaseConnection $conn) {
+    $parts = $this->buildSelectClauseParts($conn);
+    if ($this->shouldJoinSummaryTable()) {
+      $parts[] = 's.*';
     }
+    return $this->formatSelectClause($parts);
+  }
 
-    if ($join_summary_table) {
+  protected function buildJoinClause(AphrontDatabaseConnection $conn_r) {
+    $joins = $this->buildJoinClauseParts($conn_r);
+
+    if ($this->shouldJoinSummaryTable()) {
       $joins[] = qsprintf(
         $conn_r,
         'LEFT JOIN %T s ON r.id = s.repositoryID',
         PhabricatorRepository::TABLE_SUMMARY);
     }
 
-    if ($this->anyProjectPHIDs) {
-      $joins[] = qsprintf(
-        $conn_r,
-        'JOIN edge e ON e.src = r.phid');
+    return $this->formatJoinClause($joins);
+  }
+
+  private function shouldJoinSummaryTable() {
+    if ($this->needCommitCounts) {
+      return true;
     }
 
-    return implode(' ', $joins);
+    if ($this->needMostRecentCommits) {
+      return true;
+    }
+
+    $vector = $this->getOrderVector();
+    if ($vector->containsKey('committed')) {
+      return true;
+    }
+
+    if ($vector->containsKey('size')) {
+      return true;
+    }
+
+    return false;
   }
 
   protected function buildWhereClause(AphrontDatabaseConnection $conn_r) {
@@ -492,13 +503,6 @@
         $this->nameContains);
     }
 
-    if ($this->anyProjectPHIDs) {
-      $where[] = qsprintf(
-        $conn_r,
-        'e.dst IN (%Ls)',
-        $this->anyProjectPHIDs);
-    }
-
     if (strlen($this->datasourceQuery)) {
       // This handles having "rP" match callsigns starting with "P...".
       $query = trim($this->datasourceQuery);
diff --git a/src/applications/repository/query/PhabricatorRepositorySearchEngine.php b/src/applications/repository/query/PhabricatorRepositorySearchEngine.php
--- a/src/applications/repository/query/PhabricatorRepositorySearchEngine.php
+++ b/src/applications/repository/query/PhabricatorRepositorySearchEngine.php
@@ -20,7 +20,10 @@
     $saved->setParameter('hosted', $request->getStr('hosted'));
     $saved->setParameter('types', $request->getArr('types'));
     $saved->setParameter('name', $request->getStr('name'));
-    $saved->setParameter('anyProjectPHIDs', $request->getArr('anyProjects'));
+
+    $saved->setParameter(
+      'projects',
+      $this->readProjectsFromRequest($request, 'projects'));
 
     return $saved;
   }
@@ -60,10 +63,9 @@
       $query->withNameContains($name);
     }
 
-    $any_project_phids = $saved->getParameter('anyProjectPHIDs');
-    if ($any_project_phids) {
-      $query->withAnyProjects($any_project_phids);
-    }
+    $adjusted = clone $saved;
+    $adjusted->setParameter('projects', $this->readProjectTokens($saved));
+    $this->setQueryProjects($query, $adjusted);
 
     return $query;
   }
@@ -76,7 +78,7 @@
     $types = $saved_query->getParameter('types', array());
     $types = array_fuse($types);
     $name = $saved_query->getParameter('name');
-    $any_project_phids = $saved_query->getParameter('anyProjectPHIDs', array());
+    $projects = $this->readProjectTokens($saved_query);
 
     $form
       ->appendChild(
@@ -91,10 +93,10 @@
           ->setValue($name))
       ->appendControl(
         id(new AphrontFormTokenizerControl())
-          ->setDatasource(new PhabricatorProjectDatasource())
-          ->setName('anyProjects')
-          ->setLabel(pht('In Any Project'))
-          ->setValue($any_project_phids))
+          ->setDatasource(new PhabricatorProjectLogicalDatasource())
+          ->setName('projects')
+          ->setLabel(pht('Projects'))
+          ->setValue($projects))
       ->appendChild(
         id(new AphrontFormSelectControl())
           ->setName('status')
@@ -266,4 +268,15 @@
     return $list;
   }
 
+  private function readProjectTokens(PhabricatorSavedQuery $saved) {
+    $projects = $saved->getParameter('projects', array());
+
+    $any = $saved->getParameter('anyProjectPHIDs', array());
+    foreach ($any as $project) {
+      $projects[] = 'any('.$project.')';
+    }
+
+    return $projects;
+  }
+
 }